from .functions import get_sanpedro_sensor_results, get_sanpedro_results_grouped, get_sanpedro_metadata_results
from .values import fitbit_v2_values, fitbit_values, freestyle_librelink_values, holter_values,\
patrones_minsal_2018_values, alimentacion_values, inbody_values
#TODO: make grouped methods for both classes
[docs]class SanPedroStudyOcurrence:
"""
A study ocurrence class. Has methods for getting the data of all the sensors and measures of the respective study.\
An ocurrence is defined as a unit test and is related to only one participant.
"""
def __init__(self, study_info, connection):
self.connection = connection
# self.test_name = study_info["Nombre prueba"]
self.test_id = study_info["test_id"]
self.start = study_info["Desde"]
self.end = study_info["Hasta"]
self.study_info = study_info
def __repr__(self) -> str:
init_date = self.start.strftime("%Y-%m-%d")
end_date = self.end.strftime("%Y-%m-%d")
return f"{self.__class__} object (id:{self.test_id}, start_date:{init_date}, end_date:{end_date})"
def _create_get_sensor_method(collection_name):
def get_sensor_results(self, timestamp_start=None, timestamp_end=None, values="all"):
"""
:return: an iterable with the query results
:rtype: pycpshealthcare.db.results.StudyResults
:param timestamp_start: Datetime start filter for query. If not specified query will bring results from start of records.
:type timestamp_start: datetime.datetime|None, optional
:param timestamp_end: Datetime start filter for query. If not specified query will bring results to end of records.
:type timestamp_end: datetime.datetime|None, optional
:param values: The names (keys) of the values of the sensors to be returned by the query, defaults to "all" that brings
:type values: str|list<str>|None, optional
"""
test_ids = [self.test_id]
collection = self.connection.collections["SanPedro"][collection_name]
return get_sanpedro_sensor_results(test_ids, collection, timestamp_start, timestamp_end, values)
return get_sensor_results
def _create_get_sensor_grouped_method(collection_name, sensor_values):
def get_sensor_results_grouped(self, timestamp_start=None, timestamp_end=None,values="all", bin_size=60, bin_unit="minute"):
"""
:return: an iterable with the query results
:rtype: pycpshealthcare.db.results.StudyResults
:param timestamp_start: Datetime start filter for query. If not specified query will bring results from start of records.
:type timestamp_start: datetime.datetime|None, optional
:param timestamp_end: Datetime start filter for query. If not specified query will bring results to end of records.
:type timestamp_end: datetime.datetime|None, optional
:param values: The names (keys) of the values of the sensors to be returned by the query, defaults to "all" that brings
:type values: str|list<str>|None, optional
:param bin_size: The width of the mobile window, defaults to 60.
:type bin_size: int, optional
:param bin_unit: The unit of the mobile window, defaults to minute. Options are minute, hour, day.
:type bin_unit: str, optional
"""
test_ids = [self.test_id]
if values == "all":
values = sensor_values
collection = self.connection.collections["SanPedro"][collection_name]
return get_sanpedro_results_grouped(test_ids, collection, timestamp_start, timestamp_end, values, bin_size, bin_unit)
return get_sensor_results_grouped
methods_parameters = {
"get_fitbit_v2_results": _create_get_sensor_method(collection_name="fitbit_v2"),
"get_fitbit_results": _create_get_sensor_method(collection_name="fitbit"),
"get_holter_results": _create_get_sensor_method(collection_name="holter"),
"get_alimentacion_results": _create_get_sensor_method(collection_name="alimentacion"),
"get_patrones_minsal_2018_results": _create_get_sensor_method(collection_name="patrones_minsal_2018"),
"get_inbody_results": _create_get_sensor_method(collection_name="inbody"),
"get_freestyle_librelink_results": _create_get_sensor_method(collection_name="freestyle_librelink"),
}
grouped_methods_parameters = {
"get_fitbit_v2_results_grouped": _create_get_sensor_grouped_method(collection_name="fitbit_v2", sensor_values=fitbit_v2_values),
"get_fitbit_results_grouped": _create_get_sensor_grouped_method(collection_name="fitbit", sensor_values=fitbit_values),
"get_holter_results_grouped": _create_get_sensor_grouped_method(collection_name="holter", sensor_values=holter_values),
"get_alimentacion_results_grouped": _create_get_sensor_grouped_method(collection_name="alimentacion", sensor_values=alimentacion_values),
"get_patrones_minsal_2018_results_grouped": _create_get_sensor_grouped_method(collection_name="patrones_minsal_2018", sensor_values=patrones_minsal_2018_values),
"get_inbody_results_grouped": _create_get_sensor_grouped_method(collection_name="inbody", sensor_values=inbody_values),
"get_freestyle_librelink_results_grouped": _create_get_sensor_grouped_method(collection_name="freestyle_librelink", sensor_values=freestyle_librelink_values),
}
for key, value in methods_parameters.items():
setattr(SanPedroStudyOcurrence, key, value)
for key, value in grouped_methods_parameters.items():
setattr(SanPedroStudyOcurrence, key, value)
[docs]class ParticipantSanPedroStudiesGroup:
"""
A participant studies group class. Has methods for getting the data of all the sensors and measures of the respective studies group.\
A participant studies group is defined as all the ocurrences of a corresponding study type for a specific participant and is related to only one participant.
"""
def __init__(self, data, connection):
self.connection = connection
self.data = data
[docs] def get_test_instance(self, specific_test_id):
for study in self.data:
if study.test_id == specific_test_id:
return study
return None
def _create_get_sensor_method_2(collection_name):
def get_sensor_results(self, timestamp_start=None, timestamp_end=None, values="all"):
"""
:return: an iterable with the query results
:rtype: pycpshealthcare.db.results.StudyResults
:param timestamp_start: Datetime start filter for query. If not specified query will bring results from start of records.
:type timestamp_start: datetime.datetime|None, optional
:param timestamp_end: Datetime start filter for query. If not specified query will bring results to end of records.
:type timestamp_end: datetime.datetime|None, optional
:param test_ids: The ids of the tests to be queried, defaults to "all" that brings data of all the test ids.
:type test_ids: int|list<int>|None, optional
:param values: The names (keys) of the values of the sensors to be returned by the query, defaults to "all" that brings
:type values: str|list<str>|None, optional
"""
test_ids = [x.test_id for x in self.data]
collection = self.connection.collections["SanPedro"][collection_name]
return get_sanpedro_sensor_results(test_ids, collection, timestamp_start, timestamp_end, values)
return get_sensor_results
def _create_get_sensor_grouped_method_2(collection_name, sensor_values):
def get_sensor_results_grouped(self, timestamp_start=None, timestamp_end=None, test_ids="all", values="all", bin_size=60, bin_unit="minute"):
"""
:return: an iterable with the query results
:rtype: pycpshealthcare.db.results.StudyResults
:param timestamp_start: Datetime start filter for query. If not specified query will bring results from start of records.
:type timestamp_start: datetime.datetime|None, optional
:param timestamp_end: Datetime start filter for query. If not specified query will bring results to end of records.
:type timestamp_end: datetime.datetime|None, optional
:param test_ids: The ids of the tests to be queried, defaults to "all" that brings data of all the test ids.
:type test_ids: int|list<int>|None, optional
:param values: The names (keys) of the values of the sensors to be returned by the query, defaults to "all" that brings
:type values: str|list<str>|None, optional
:param bin_size: The width of the mobile window, defaults to 60.
:type bin_size: int, optional
:param bin_unit: The unit of the mobile window, defaults to minute. Options are minute, hour, day.
:type bin_unit: str, optional
"""
if test_ids == "all":
test_ids = [x.test_id for x in self.data]
else:
if str(test_ids).isnumeric():
test_ids = [int(test_ids)]
elif type(test_ids) == list:
test_ids = test_ids
if values == "all":
values = sensor_values
collection = self.connection.collections["SanPedro"][collection_name]
return get_sanpedro_results_grouped(test_ids, collection, timestamp_start, timestamp_end, values, bin_size, bin_unit)
return get_sensor_results_grouped
methods_parameters_2 = {
"get_fitbit_v2_results": _create_get_sensor_method_2(collection_name="fitbit_v2"),
"get_fitbit_results": _create_get_sensor_method_2(collection_name="fitbit"),
"get_holter_results": _create_get_sensor_method_2(collection_name="holter"),
"get_alimentacion_results": _create_get_sensor_method_2(collection_name="alimentacion"),
"get_patrones_minsal_2018_results": _create_get_sensor_method_2(collection_name="patrones_minsal_2018"),
"get_inbody_results": _create_get_sensor_method_2(collection_name="inbody"),
"get_freestyle_librelink_results": _create_get_sensor_method_2(collection_name="freestyle_librelink"),
}
grouped_methods_parameters_2 = {
"get_fitbit_v2_results_grouped": _create_get_sensor_grouped_method_2(collection_name="fitbit_v2", sensor_values=fitbit_v2_values),
"get_fitbit_results_grouped": _create_get_sensor_grouped_method_2(collection_name="fitbit", sensor_values=fitbit_values),
"get_holter_results_grouped": _create_get_sensor_grouped_method_2(collection_name="holter", sensor_values=holter_values),
"get_alimentacion_results_grouped": _create_get_sensor_grouped_method_2(collection_name="alimentacion", sensor_values=alimentacion_values),
"get_patrones_minsal_2018_results_grouped": _create_get_sensor_grouped_method_2(collection_name="patrones_minsal_2018", sensor_values=patrones_minsal_2018_values),
"get_inbody_results_grouped": _create_get_sensor_grouped_method_2(collection_name="inbody", sensor_values=inbody_values),
"get_freestyle_librelink_results_grouped": _create_get_sensor_grouped_method_2(collection_name="freestyle_librelink", sensor_values=freestyle_librelink_values),
}
for key, value in methods_parameters_2.items():
setattr(ParticipantSanPedroStudiesGroup, key, value)
for key, value in grouped_methods_parameters_2.items():
setattr(ParticipantSanPedroStudiesGroup, key, value)